Thesis (1)
  1. Christopher Mueller. Synthetic Programming: User-Directed Run-Time Code Synthesis for High Performance Computing. PhD thesis, Indiana University, 2007. [bibtex-entry]


Articles in journals or book chapters (2)
  1. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. High-Performance Direct Pairwise Comparison of Large Genomic Sequences. IEEE Transactions on Parallel and Distributed Systems, Special Issue - High-Performance Computational Biology, 17(8):764-772, 2006. [bibtex-entry]


  2. Debasis Dan, Chris Mueller, Kun Chen, and James A. Glazier. Solving the advection-diffusion equations in biological contexts using the cellular Potts model. Phys. Rev. E, 72(041909), October 2005. [bibtex-entry]


Conference articles (7)
  1. Andrew Friedley, Christopher Mueller, Ben Martin, and Andrew Lumsdaine. High-Performance Code Generation Using CorePy. In SciPy 2009, August 2009. [bibtex-entry]


  2. Christopher Mueller, Benjamin Martin, and Andrew Lumsdaine. A Comparison of Vertex Ordering Algorithms for Large Graph Visualization. In Asia-Pacific Symposium on Visualization, February 2007. [bibtex-entry]


  3. Christopher Mueller, Benjamin Martin, and Andrew Lumsdaine. Interpreting Large Visual Similarity Matrices. In Asia-Pacific Symposium on Visualization, February 2007. [bibtex-entry]


  4. Christopher Mueller and Andrew Lumsdaine. Exression and Loop Libraries for High-Performance Code Synthesis. In Languages and Compilers for Parallel Computing, November 2006. [bibtex-entry]


  5. Christopher Mueller and Andrew Lumsdaine. Runtime Synthesis of High-Performance Code from Scripting Languages. In Dynamic Language Symposion at OOPSLA 2006, October 2006. [bibtex-entry]


  6. Christopher Mueller, Douglas Gregor, and Andrew Lumsdaine. Distributed Force-Directed Graph Layout and Visualization. In Eurographics Symposium on Parallel Graphics and Visualization, May 2006. [bibtex-entry]


  7. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. High-Performance Direct Pairwise Comparison of Large Genomic Sequences. In Proceedings of the Fourth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2005), April 2005. [bibtex-entry]


Posters and Presentations (11)
  1. Andrew Friedley, Christopher Mueller, and Andrew Lumsdaine. Presenting CorePy: A Synthetic Programming Environment For Python, March 2009.
    Note: Poster Presentation at CGO 2009. [bibtex-entry]


  2. Andrew Friedley, Christopher Mueller, and Andrew Lumsdaine. And Now For Something Completely Different..., November 2008.
    Note: Presentation at SC 2008. [bibtex-entry]


  3. Christopher Mueller. CorePy: High-Productivity Cell/B.E. Programming, June 2007.
    Note: Presentation at Georgia Tech STI Cell/B.E. Workshop. [bibtex-entry]


  4. Joseph A. Cottam, Ben Martin, Chris Mueller, and Andrew Lumsdaine. Reading the Envelope: Understanding Visual Similarity Matrices. IEEE Symposium on Visualization (poster), 2007.
    Keywords: Visualization. [bibtex-entry]


  5. Christopher Mueller. Agile High-performance Software Development, January 2007.
    Note: Presentation at RIDMS-2. [bibtex-entry]


  6. Christopher Mueller, Benjamin Martin, and Andrew Lumsdaine. BLAST on IBM's Cell Broadband Engine, November 2006.
    Note: Presentation at SuperComputing 2006. [bibtex-entry]


  7. Christopher Mueller and Andrew Lumsdaine. Synthetic Programming with Python, August 2006.
    Note: Presentation at SciPy 2006. [bibtex-entry]


  8. Christopher Mueller and Andrew Lumsdaine. Synthetic Programming, August 2006.
    Note: Invited seminar at Intel. [bibtex-entry]


  9. Christopher Mueller and Andrew Lumsdaine. PSWEEP: A Lightweight Pattern for Distributed Computational Experiments, February 2006.
    Note: Presentation at SIAM Conference on Parallel Processing, San Francisco, California. [bibtex-entry]


  10. Christopher Mueller and Andrew Lumsdaine. Developing Reliable Complex Software Systems in a Research Environment, September 2005.
    Note: Presentation at iLight 2005. [bibtex-entry]


  11. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. Implementing Data Parallel Algorithms for Bioinformatics, February 2005.
    Note: Presentation at SIAM Conference on Computational Science and Engineering, Orlando, FL. [bibtex-entry]



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