2016 (3)
  1. J. DeBuhr, B. Zhang, A. Tsueda, V. Tilstra-Smith, and T. Sterling. DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods. Communications in Computational Physics, 20:1106-1126, October 2016.
    Keywords: Barnes-Hut method, fast multipole method, Laplace potential, ParalleX, runtime software, HPX. [bibtex-entry]


  2. L. Lehner, S. L Liebling, C. Palenzuela, O. L. Caballero, E. O'Connor, M. Anderson, and D. Neilsen. Unequal mass binary neutron star mergers and multimessenger signals. Class. Quantum Grav., 33:184002, September 2016. [bibtex-entry]


  3. B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. recFMM: Recursive Parallelization of the Adaptive Fast Multipole Method for Coulomb and Screened Coulomb Interactions. Communications in Computational Physics, 20:534-550, 2016. [bibtex-entry]


2015 (8)
  1. J. DeBuhr, B. Zhang, M. Anderson, D. Neilsen, and E. W. Hirschmann. Relativistic Hydrodynamics with Wavelets. ArXiv e-prints, December 2015.
    Keywords: Astrophysics - Instrumentation and Methods for Astrophysics, Astrophysics - High Energy Astrophysical Phenomena. [bibtex-entry]


  2. C. Palenzuela, Steven L. Liebling, L. Lehner, O. L. Caballero, E. O'Connor, and M. Anderson. Effects of the microphysical Equation of State in the mergers of magnetized Neutron Stars With Neutrino Cooling. Phys. Rev. D., 92:044045, August 2015. [bibtex-entry]


  3. Prasad Calyam and Martin Swany. Research Challenges in Future Multi-domain Network Performance Measurement and Monitoring. ACM SIGCOMM Computer Communication Review, 45(3):29-34, July 2015. [bibtex-entry]


  4. J. P. Naiman, E. Ramirez-Ruiz, J. DeBuhr, and C.-P. Ma. The Role of Nuclear Star Clusters in Enhancing Supermassive Black Hole Feeding Rates During Galaxy Mergers. The Astrophysical Journal, 803:81, April 2015.
    Keywords: accretion, accretion disks, galaxies: active, galaxies: nuclei. [bibtex-entry]


  5. K. Wang, A. Kulkarni, M. Lang, D. Arnold, and I. Raicu. Exploring the Design Tradeoffs for Extreme-Scale High-Performance Computing System Software. Parallel and Distributed Systems, IEEE Transactions on, PP(99):1-1, April 2015.
    Keywords: Data models, Distributed databases, Memory management, Servers, System software, Taxonomy, Distributed systems, High-performance computing, Key-value stores, Simulation, Systems and Software. [bibtex-entry]


  6. Jesun Sahariar Firoz, Thejaka Amila Kanewala, Marcin Zalewski, Martina Barnas, and Andrew Lumsdaine. The Anatomy of Large-Scale Distributed Graph Algorithms. CoRR, abs/1507.06702, 2015. [bibtex-entry]


  7. Y. Gu, W. Chen, and B. Zhang. Stress analysis for two-dimensional thin structural problems using the meshless singular boundary method. Engineering Analysis with Boundary Elements, 59:1-7, 2015. [bibtex-entry]


  8. B. Zhang, B. Peng, J. Huang, N. P. Pitsianis, X. Sun, and B. Lu. Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy. Computer Physics Communications, 190:173-181, 2015. [bibtex-entry]


2014 (6)
  1. Thomas Sterling, Daniel Kogler, Matthew Anderson, and Maciej Brodowicz. SLOWER: A performance model for Exascale computing. Supercomputing Frontiers and Innovations, 1:42--57, September 2014.
    Keywords: HPX. [bibtex-entry]


  2. David Neilsen, Steven L. Liebling, Matthew Anderson, Luis Lehner, Evan O'Connor, and Carlos Palenzuela. Magnetized neutron stars with realistic equations of state and neutrino cooling. Phys. Rev. D., 89:104029, May 2014. [bibtex-entry]


  3. Joseph A. Cottam and Peter Wang. Preserving Data While Rendering. Parsons Journal for Information Mapping, 6(1), January 2014. [bibtex-entry]


  4. Y. Gu, W. Chen, Z.-J. Fu, and B. Zhang. The singular boundary method: Mathematical background and application in orthotropic elastic problems. Engineering Analysis with Boundary Elements, 2014. [bibtex-entry]


  5. Y. Gu, W. Chen, B. Zhang, and W. Qu. Two general algorithms for nearly singular integrals in two dimensional anisotropic boundary element method. Computational Mechanics, 53:1223-1234, 2014. [bibtex-entry]


  6. Thomas Sterling, Maciej Brodowicz, and Timur Gilmanov. Towards Brain-Inspired System Architectures. In Brain-Inspired Computing, volume 8603 of Lecture Notes in Computer Science, pages 159-170. Springer International Publishing, 2014. [bibtex-entry]


2013 (15)
  1. Yuan Luo, Ezra Kissel, Beth Plale, and Martin Swany. Network Transfer over Pacific Rim on PRAGMA Cloud. 10/2013 2013. [bibtex-entry]


  2. Carlos Palenzuela, Luis Lehner, Marcelo Ponce, Steven L. Liebling, Matthew Anderson, David Neilsen, and Patrick Motl. Electromagnetic and Gravitational Outputs from Binary-Neutron-Star Coalescence. Phys. Rev. Lett., 111:061105, August 2013. [bibtex-entry]


  3. Carlos Palenzuela, Luis Lehner, Marcelo Ponce, Steven L. Liebling, Matthew Anderson, David Neilsen, and Patrick Motl. Linking electromagnetic and gravitational radiation in coalescing binary neutron stars. Phys. Rev. D., 88:043011, August 2013. [bibtex-entry]


  4. D. Demidov, K. Ahnert, K. Rupp, and P. Gottschling. Programming CUDA and OpenCL: A Case Study Using Modern C++ Libraries. SIAM Journal on Scientific Computing, April 2013.
    Note: Accepted. [bibtex-entry]


  5. Michael Hansen, Robert L. Goldstone, and Andrew Lumsdaine. What Makes Code Hard to Understand?. ArXiv e-prints, April 2013.
    Keywords: Computer Science - Software Engineering, H.1.2. [bibtex-entry]


  6. Abhishek Kulkarni, Latchesar Ionkov, Michael Lang, and Andrew Lumsdaine. Optimizing process creation and execution on multi-core architectures. International Journal of High Performance Computing Applications, April 2013. [bibtex-entry]


  7. Martin Swany. Effective and Efficient Utilization of Networks. April 2013. [bibtex-entry]


  8. Ahmed El-Hassany, Matthew Jaffee, Ezra Kissel, Martin Swany, and Dan Gunter. Periscope: A System for Measuring End-to-End Network Performance. IEEE Communications Magazine, March 2013. [bibtex-entry]


  9. Martin Swany. Unified Experiment Environment. March 2013. [bibtex-entry]


  10. Ani Anciaux-Sedrakian, Peter Gottschling, Jean-Marc Gratien, and Thomas Guignon. Survey on efficient linear solvers for porous media flow models on recent hardware architectures. Oil & Gas Science and Technology (OSGT), February 2013.
    Note: Submitted. [bibtex-entry]


  11. Erik Silkensen and Jeremy G. Siek. Well-typed Islands Parse Faster. Lecture Notes in Computer Science, Volume 7829:69--84, 2013.
    Note: Trends in Functional Programming. [bibtex-entry]


  12. Martin Swany. Developing a Unified Network Information Service. January 2013. [bibtex-entry]


  13. Martin Swany. Tools and Resources for Software Defined Networks. January 2013. [bibtex-entry]


  14. Martin Swany. Driving Software Defined Networks with XSP. 2013. [bibtex-entry]


  15. B. Zhang, B. Lu, X. Cheng, J. Huang, N. P. Pitsianis, X. Sun, and J. A. McCammon. Mathematical and numerical aspects of the adaptive fast multipole Poisson-Boltzmann solver. Communications in Computational Physics, 13:107--128, 2013. [bibtex-entry]


2012 (13)
  1. S.K. Prasad, A. Gupta, K. Kant, A. Lumsdaine, D. Padua, Y. Robert, A. Rosenberg, A. Sussman, C. Weems, and others. Literacy for all in Parallel and Distributed Computing: Guidelines for an Undergraduate Core Cirriculum. CSI Journal of Computing, December 2012. [bibtex-entry]


  2. Gupta P. Kambadur, A. Ghoting, A and A. Lumsdaine. Extending Task Parallelism for Frequent Pattern Mining. CoRR, 1211.1658, November 2012. [bibtex-entry]


  3. J. DeBuhr, C.-P. Ma, and S. D. M. White. Stellar discs in Aquarius dark matter haloes. Monthly Notices of the Royal Astronomical Society, 426:983-999, October 2012.
    Keywords: galaxies: evolution, galaxies: formation, galaxies: kinematics and dynamics, galaxies: structure, cosmology: theory, dark matter. [bibtex-entry]


  4. Nadejda Kirchner, Martin Sauer, Arnold Klomfass, Peter Gottschling, and Ren? Heinzl. A new mesh deformation algorithm for the ALE technique. Multiphysics Journal, June 2012.
    Note: Accepted for Special Edition for Fraunhofer Conference on Multiphysics Simulation and Engineering. [bibtex-entry]


  5. S.K. Prasad, A. Gupta, K. Kant, A. Lumsdaine, D.A. Padua, Y. Robert, A. Rosenberg, A. Sussman, C.C. Weems, and others. Toward a core undergraduates curriculum in parallel and distributed computing. Computer Education (China), pp 76--90, June 2012. [bibtex-entry]


  6. Chirag Dekate, Matthew Anderson, Maciej Brodowicz, Hartmut Kaiser, Bryce Adelstein-Lelbach, and Thomas Sterling. Improving the scalability of parallel N-body applications with an event-driven constraint-based execution model. International Journal of High Performance Computing Applications, April 2012. [bibtex-entry]


  7. Martin Swany. Monitoring and Accelerating GridFTP. April 2012. [bibtex-entry]


  8. Martin Swany. Scalable Integrated Performance Analysis of Multi-Gigabit Networks. April 2012. [bibtex-entry]


  9. J. DeBuhr, E. Quataert, and C.-P. Ma. Galaxy-scale outflows driven by active galactic nuclei. Monthly Notices of the Royal Astronomical Society, 420:2221-2231, March 2012.
    Keywords: galaxies: active, galaxies: evolution. [bibtex-entry]


  10. Martin Swany. GEMINI: A GENI Instrumentation and Measurement Architecture. March 2012. [bibtex-entry]


  11. David Broman and Jeremy G. Siek. Modelyze: a Gradually Typed Host Language for Embedding Equation-Based Modeling Languages. Science of Computer Programming, 2012.
    Note: Submitted for review. [bibtex-entry]


  12. Thomas Nelson, Geoffrey Belter, Jeremy G. Siek, Elizabeth Jessup, and Boyana Norris. Reliable Generation of High-Performance Matrix Algebra. ACM Transactions on Mathematical Software (TOMS), 2012.
    Note: Submitted for review.[bibtex-entry]


  13. Jeremy G. Siek. The C++0x ``Concepts'' Effort. Lecture Notes in Computer Science, 7470:175--216, 2012.
    Note: Special Issue Generic and Indexed Programming. [bibtex-entry]


2011 (7)
  1. Shinya Ito, Michael Hansen, Randy Heiland, Andrew Lumsdaine, Alan M. Litke, and John M. Beggs. Extending Transfer Entropy Improves Identification of Effective Connectivity in a Spiking Cortical Network Model. PLoS ONE, 6(11):e27431, November 2011. [bibtex-entry]


  2. Jeremy G. Siek and Andrew Lumsdaine. A Language for Generic Programming in the Large. Science of Computer Programming, 76:423--465, September 2011. [bibtex-entry]


  3. Jeremy G. Siek and Andrew Lumsdaine. A language for generic programming in the large. Sci. Comput. Program., 76(5):423-465, May 2011. [bibtex-entry]


  4. J. DeBuhr, E. Quataert, and C.-P. Ma. The growth of massive black holes in galaxy merger simulations with feedback by radiation pressure. Monthly Notices of the Royal Astronomical Society, 412:1341-1360, April 2011.
    Keywords: galaxies: active, galaxies: evolution. [bibtex-entry]


  5. Ian Karlin, Elizabeth Jessup, Geoffrey Belter, and Jeremy G. Siek. Parallel memory prediction for fused linear algebra kernels. SIGMETRICS Perform. Eval. Rev., 38:43--49, March 2011. [bibtex-entry]


  6. T. Georgiev, A. Lumsdaine, and G. Chunev. Using Focused Plenoptic Cameras for Rich Image Capture. Computer Graphics and Applications, IEEE, 31(1):62 -73, Jan.-feb. 2011.
    Keywords: interleaved set, lens aperture, microlens array, non3D structure, plenoptic cameras, plenoptic function, rich image capture, cameras, image sensors, microlenses;. [bibtex-entry]


  7. B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. A Fourier-series-based kernel-independent fast multipole method. Journal of Computational Physics, 230:5807--5821, 2011. [bibtex-entry]


2010 (10)
  1. P. Balaji, D. Buntinas, D. Goodell, W. Gropp, T. Hoefler, S. Kumar, E. Lusk, R. Thakur, and J. L. Traeff. MPI on Millions of Cores. Parallel Processing Letters (PPL), Dec. 2010. [bibtex-entry]


  2. T. Hoefler. Software and Hardware Techniques for Power-Efficient HPC Networking. Computing in Science and Engineering (CiSE), Dec. 2010.
    Note: Accepted for publication. [bibtex-entry]


  3. J. DeBuhr, E. Quataert, C.-P. Ma, and P. Hopkins. Self-regulated black hole growth via momentum deposition in galaxy merger simulations. Monthly Notices of the Royal Astronomical Society, 406:L55-L59, July 2010.
    Keywords: galaxies: active, galaxies: formation. [bibtex-entry]


  4. T. Hoefler, T. Schneider, and A. Lumsdaine. Accurately Measuring Overhead, Communication Time and Progression of Blocking and Nonblocking Collective Operations at Massive Scale. International Journal of Parallel, Emergent and Distributed Systems, 25(4):241-258, Jul. 2010. [bibtex-entry]


  5. T. Hoefler, R. Rabenseifner, H. Ritzdorf, B. R. de Supinski, R. Thakur, and J. L. Traeff. The Scalable Process Topology Interface of MPI 2.2. Concurrency and Computation: Practice and Experience, Jun. 2010.
    Note: Accepted for publication. [bibtex-entry]


  6. Jean-Philippe Bernardy, Patrik Jansson, Marcin Zalewski, and Sibylle Schupp. Generic Programming with C++ Concepts and Haskell Type Classes -- a Comparison. Journal of Functional Programming, 20(Special Issue 3-4):271--302, 2010. [bibtex-entry]


  7. Ronald Garcia, Andrew Lumsdaine, and Amr Sabry. Lazy Evaluation and Delimited Control. Logical Methods in Computer Science, 6(3), 2010. [bibtex-entry]


  8. Todor Georgiev and Andrew Lumsdaine. Focused plenoptic camera and rendering. Journal of Electronic Imaging, 19(2):021106, 2010.
    Keywords: cameras, image resolution, microlenses. [bibtex-entry]


  9. T. Georgiev and A. Lumsdaine. Reducing Plenoptic Camera Artifacts. Computer Graphics Forum, 2010. [bibtex-entry]


  10. B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. Revision of FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions. Computer Physics Communications, 181:2206--2207, 2010. [bibtex-entry]


2009 (7)
  1. Peter Gottschling, David S. Wise, and Adwait Joshi. Generic Support of Algorithmic and Structural Recursion for Scientific Computing. The International Journal of Parallel, Emergent and Distributed Systems (IJPEDS), 24(6):479--503, December 2009. [bibtex-entry]


  2. T. Hoefler, T. Schneider, and A. Lumsdaine. The Effect of Network Noise on Large-Scale Collective Communications. Parallel Processing Letters (PPL), Dec. 2009. [bibtex-entry]


  3. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory (SIMPAT), 17(9):1511-1521, Oct. 2009. [bibtex-entry]


  4. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory, Jun. 2009. [bibtex-entry]


  5. J. Huang, J. Jia, and B. Zhang. FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions. Computer Physics Communications, 180:2331-2338, 2009. [bibtex-entry]


  6. M. H. Swat, S. D. Hester, A. I. Balter, R. W. Heiland, B. L. Zaitlen, and J. A. Glazier. Multicell simulations of development and disease using the CompuCell3D simulation environment. In I. V. Maly, editor,Systems Biology, volume 500 of Methods in Molecular Biology, pages 361--428. Humana Press, Clifton, NJ, 2009. [bibtex-entry]


  7. Marcin Zalewski and Sibylle Schupp. A Semantic Definition of Separate Type Checking in C++ with Concepts. Journal of Object Technology, 8(5):105--132, 2009.
    Note: Extended version available in Zalewski's PhD thesis. [bibtex-entry]


2008 (5)
  1. Peter Gottschling and Jens Maurer. ?berarbeitung von C++ auf der Zielgeraden. DIN Mitteilungen, pp 21--23, 12 2008. [bibtex-entry]


  2. Douglas Gregor. Easier C++: An Introduction to Concepts. DevX.com Special Report, August 2008.
    Note: Rlhttp://www.devx.com/SpecialReports/Article/38864. [bibtex-entry]


  3. Justin E. Gottschlich, Jeremy G. Siek, and Daniel A. Connors. C++ Move Semantics for Exception Safety and Optimization in Software Transactional Memory Libraries. In Proceedings of the Third International Workshop on Implementation, Compilation, Optimization of Object-Oriented Languages, Programs and Systems (ICOOOLPS). In conjunction with ECOOP.. July 2008. [bibtex-entry]


  4. Douglas Gregor and Jaakko Järvi. Variadic Templates for C++0x. Journal of Object Technology, 7(2):31--51, February 2008. [bibtex-entry]


  5. R. H. Castain, T. S. Woodall, D. J. Daniel, J. M. Squyres, B. Barrett, and G. E. Fagg. The Open Run-Time Environment (OpenRTE): A transparent multicluster environment for high-performance computing. Future Generation Computer Systems, 24(2):153--157, 2008. [bibtex-entry]


2007 (10)
  1. Torsten Hoefler, Peter Gottschling, Andrew Lumsdaine, and Wolfgang Rehm. Optimizing a Conjugate Gradient Solver with Non-Blocking Collective Operations. Elsevier Journal of Parallel Computing (PARCO), 33(9):624-633, 9 2007. [bibtex-entry]


  2. Ronald Garcia, Jaakko Järvi, Andrew Lumsdaine, Jeremy Siek, and Jeremiah Willcock. An Extended Comparative Study of Language Support for Generic Programming. Journal of Functional Programming, 17(2):145--205, March 2007. [bibtex-entry]


  3. Ronald Garcia, Jaakko Järvi, Andrew Lumsdaine, Jeremy G. Siek, and Jeremiah Willcock. An extended comparative study of language support for generic programming. Journal of Functional Programming, 17(2):145--205, March 2007. [bibtex-entry]


  4. Richard L. Graham, Brian W. Barrett, Galen M. Shipman, Timothy S. Woodall, and George Bosilca. Open MPI: A High Performance, Flexible Implementation of MPI Point-to-Point Communications. Parallel Processing Letters, 17(1):79--88, March 2007. [bibtex-entry]


  5. X. Dong, K. E. Gilbert, R. Guha, R. Heiland, J. Kim, M. E. Pierce, and D. J. Wild G. C. Fox. Web Service Infrastructure for Chemoinformatics. Journal of Chemical Information and Modeling, 47(4):1303-1307, 2007. [bibtex-entry]


  6. Daniel P. Friedman, Abdulaziz Ghuloum, Jeremy G. Siek, and Onnie Lynn Winebarger. Improving the lazy Krivine machine. Higher Order and Symbolic Computation, 20(3):271--293, 2007. [bibtex-entry]


  7. Andrew Lumsdaine, Douglas Gregor, Bruce Hendrickson, and Jonathan Berry. Challenges in Parallel Graph Processing. Parallel Processing Letters, 17(1):5--20, January 2007. [bibtex-entry]


  8. A. Moad, C. Moad, R. Wampler J. Perry, G.S. Goeken, N. Begue, T. Shen, R. Heiland, and G. Simpson. NLOPredict: Visualization and data analysis software for nonlinear optics. Journal of Computational Chemistry, 28(12):1996-2002, 2007. [bibtex-entry]


  9. A. Singh, A. Olowoyeye, P. H. Baenziger, J. Dantzer, M. G. Kann, P. Radivojac, R. Heiland, and S.D. Mooney. MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Research, 36(1):D815--D819, 2007. [bibtex-entry]


  10. R. D. Wampler, A. J. Moad, C. W. Moad, R. Heiland, and G. J. Simpson. Visual Methods for Interpreting Optical Nonlinearity at the Molecular Level. Accounts of Chemical Research, 40(10):953-960, 2007. [bibtex-entry]


2006 (5)
  1. R. Heiland. XML for Bioinformatics. Briefings in Bioinformatics, February 2006. [bibtex-entry]


  2. Douglas Gregor and Sibylle Schupp. STLlint: Lifting static checking from languages to libraries. Software: Practice & Experience, 36:225--254, 2006. [Annotation] [bibtex-entry]


  3. W. Gropp and A. Lumsdaine. Parallel Tools and Environments: A Survey. In M.A. Heroux, P. Raghaven, and H.D. Simon, editors,Parallel Processing for Scientific Computing, Society for Industrial and Applied Mathematics. 2006. [bibtex-entry]


  4. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. High-Performance Direct Pairwise Comparison of Large Genomic Sequences. IEEE Transactions on Parallel and Distributed Systems, Special Issue - High-Performance Computational Biology, 17(8):764-772, 2006. [bibtex-entry]


  5. B. Peters, C. Moad, E. Youn, K. Buffington, R. Heiland, and S.D. Mooney. Identification of Similar Regions of Protein Structures Using Integrated Sequence and Structure Analysis Tools. BMC Structural Biology, 6(4):1996-2002, 2006. [bibtex-entry]


2005 (20)
  1. A. Hanemann, J. Boote, E. Boyd, J. Durand, L. Kudarimoti, R. Lapacz, M. Swany, S. Trocha, and J. Zurawski. Perfsonar: A Service Oriented Architecture for Multi-Domain Network Monitoring. In Proceedings of the Third International Conference on Service Oriented Computing (ICSOC 2005), pp 241-254, December 2005. [bibtex-entry]


  2. T. Hoefler, R. Janisch, and W. Rehm. A Performance Analysis of ABINIT on a Cluster System, pages 37-51. Springer, Lecture Notes in Computational Science and Engineering, 12 2005. [bibtex-entry]


  3. T. Hoefler, R. Janisch, and W. Rehm. Improving the parallel scaling of ABINIT, pages 551-559. CINECA Conzorzio Interuniversitario, 12 2005. [bibtex-entry]


  4. Sriram Sankaran, Jeffrey M. Squyres, Brian Barrett, Andrew Lumsdaine, Jason Duell, Paul Hargrove, and Eric Roman. The LAM/MPI Checkpoint/Restart Framework: System-Initiated Checkpointing. International Journal of High Performance Computing Applications, 19(4):479--493, December 2005.
    Keywords: MPI, checkpoint/restart, rollback-recovery. [bibtex-entry]


  5. M. Murray, S. Smallen, O. Khalili, and M. Swany. Comparison of End-to-end Bandwidth Measurement Tools on the 10GigE TeraGrid Backbone. 6th International Workshop on Grid Computing (Grid2005) -Poster Session, November 2005. [bibtex-entry]


  6. Debasis Dan, Chris Mueller, Kun Chen, and James A. Glazier. Solving the advection-diffusion equations in biological contexts using the cellular Potts model. Phys. Rev. E, 72(041909), October 2005. [bibtex-entry]


  7. J. Atlas, K. Decker, and M. Swany. Flexible Grid Workflows Using TAEMS. Workshop on Exploring Planning and Scheduling for Web Services, Grid and Autonomic Computing (with AAAI-05), July 2005. [bibtex-entry]


  8. Douglas Gregor, Jaakko Järvi, Mayuresh Kulkarni, Andrew Lumsdaine, David Musser, and Sibylle Schupp. Generic Programming and High-Performance Libraries. International Journal of Parallel Programming, 33(2), June 2005. [Annotation] [bibtex-entry]


  9. Lie-Quan Lee and Andrew Lumsdaine. Generic Programming for High Performance Scientific Applications. Concurrency and Computation: Practice & Experience, 17(7-8):941--965, June/july 2005. [bibtex-entry]


  10. Jeffrey M. Squyres. Doing More With Less. ClusterWorld Magazine, MPI Mechanic Column, 3(6):32--34,50, June 2005.
    Keywords: MPI. [bibtex-entry]


  11. Jeremiah Willcock, Andrew Lumsdaine, and Arch Robison. Using MPI with C# and the Common Language Infrastructure. Concurrency and Computation: Practice & Experience, 17(7-8):895--917, June/july 2005. [bibtex-entry]


  12. Jeffrey M. Squyres. Progress is the Opposite of Congress. ClusterWorld Magazine, MPI Mechanic Column, 3(5):32--35, May 2005.
    Keywords: MPI. [bibtex-entry]


  13. Jeffrey M. Squyres. Why Are There So Many MPI Implementations?. ClusterWorld Magazine, MPI Mechanic Column, 3(4):32--35, April 2005.
    Keywords: MPI. [bibtex-entry]


  14. Jeffrey M. Squyres. Is Your Application Spawnworthy?. ClusterWorld Magazine, MPI Mechanic Column, 3(3):32--33,46--47, March 2005.
    Keywords: MPI. [bibtex-entry]


  15. Jeffrey M. Squyres. The Spawn of MPI. ClusterWorld Magazine, MPI Mechanic Column, 3(2):40--43, February 2005.
    Keywords: MPI. [bibtex-entry]


  16. J. Dantzer, C. Moad, R. Heiland, and S.D. Mooney. MutDB services: interactive structural analysis of mutation data. Nucleic Acids Research, 33(2):W311--W314, 2005. [bibtex-entry]


  17. Jesse Davis, Douglas Stark, and Nicholas Edmonds. Method of Interaction in a Modular Architecture for Sensor Systems (MASS). International Journal of Software Engineering and Knowledge Engineering, 5(2), 2005. [bibtex-entry]


  18. Ronald Garcia and Andrew Lumsdaine. MultiArray: a C++ library for generic programming with arrays.. Softw., Pract. Exper., 35(2):159--188, 2005. [bibtex-entry]


  19. Ralf Müller, Peter Gottschling, and Martin Gaber. Water Concentration and Diffusivity in Silicates Obtained by Vacuum Extraction. Glass Science and Technology, 78:76--89, 2005. [bibtex-entry]


  20. Jeffrey M. Squyres. Debugging in Parallel (in Parallel). ClusterWorld Magazine, MPI Mechanic Column, 3(1):34--37, January 2005.
    Keywords: MPI. [bibtex-entry]


2004 (13)
  1. Jeffrey M. Squyres. MPI Debugging -- Can You Hear Me Now?. ClusterWorld Magazine, MPI Mechanic Column, 2(12):32--35, December 2004.
    Keywords: MPI. [bibtex-entry]


  2. Jeffrey M. Squyres. MPI_Reduce: Introducing Open MPI. ClusterWorld Magazine, 2(11):20--28, November 2004.
    Keywords: MPI. [bibtex-entry]


  3. Jeffrey M. Squyres. More Joys of Asynchronous Communication. ClusterWorld Magazine, MPI Mechanic Column, 2(10):34--36, October 2004.
    Keywords: MPI. [bibtex-entry]


  4. Jeffrey M. Squyres. The Joys of Asynchronous Computing. ClusterWorld Magazine, MPI Mechanic Column, 2(9):36--38, September 2004.
    Keywords: MPI. [bibtex-entry]


  5. Jeffrey M. Squyres. In Parallel, Everyone Hears You Scream II. ClusterWorld Magazine, MPI Mechanic Column, 2(8):34--36, August 2004.
    Keywords: MPI. [bibtex-entry]


  6. Jeffrey M. Squyres. In Parallel, Everyone Hears You Scream. ClusterWorld Magazine, MPI Mechanic Column, 2(7):36--37, July 2004.
    Keywords: MPI. [bibtex-entry]


  7. Brian W. Barrett. Return of the MPI Datatypes. ClusterWorld Magazine, MPI Mechanic Column, 2(6):34--36, June 2004.
    Keywords: MPI. [bibtex-entry]


  8. Jeffrey M. Squyres. How to Succeed in Datatypes Without Really Trying. ClusterWorld Magazine, MPI Mechanic Column, 2(5):32--34, May 2004.
    Keywords: MPI. [bibtex-entry]


  9. Jeffrey M. Squyres. Everything You Wanted to Know About Groups and Communicators. ClusterWorld Magazine, MPI Mechanic Column, 2(4):32--34, 48, April 2004.
    Keywords: MPI. [bibtex-entry]


  10. Jeffrey M. Squyres. Zen and the Art of MPI Collectives. ClusterWorld Magazine, MPI Mechanic Column, 2(3):32--34, March 2004.
    Keywords: MPI. [bibtex-entry]


  11. Jeffrey M. Squyres. What Really Happens During MPI_INIT. ClusterWorld Magazine, MPI Mechanic Column, 2(2):26--28, 46, February 2004.
    Keywords: MPI. [bibtex-entry]


  12. Jiangtao Cheng, J. P. Morris, John Tran, Andrew Lumsdaine, N. J. Giordano, and L. J. Pyrak-Nolte. Single Phase Flow in a Fracture: Micro-Model Experiments & Network Flow Simulation. International Journal of Rock Mechanics, 41(4):687--693, 2004. [bibtex-entry]


  13. Jeffrey M. Squyres. Processes, Processors, and MPI, Oh My!. ClusterWorld Magazine, MPI Mechanic Column, 2(1), January 2004.
    Keywords: MPI. [bibtex-entry]


2003 (9)
  1. Jeffrey M. Squyres. Definitions and Fundamentals -- The Message Passing Interface (MPI). ClusterWorld Magazine, MPI Mechanic Column, 1(1):26--29, December 2003.
    Keywords: MPI. [bibtex-entry]


  2. M. Swany and R. Wolski. Network Scheduling for Computational Grid Environments. Workshop on Adaptive Grid Middleware 2003 (in association with PACT03), September 2003. [bibtex-entry]


  3. J. Järvi, J. Willcock, H. Hinnant, and A. Lumsdaine. Function Overloading Based on Arbitrary Properties of Types. C/C++ Users Journal, 21(6):25--32, June 2003.
    Note: Magazine. [bibtex-entry]


  4. B. Lowekamp, B. Tierney, Les Cottrell, R. Hughes-Jones, T. Kielmann, and M. Swany. Enabling Network Measurement Portability Through a Hierarchy of Characteristics. 4th International Workshop on Grid Computing (Grid2003), May 2003. [bibtex-entry]


  5. Daniel P. Friedman, Abdulaziz Ghuloum, Jeremy G. Siek, and Lynn Winebarger. Improving the Lazy Krivine Machine. Higher-Order and Symbolic Computation, 2003.
    Note: Accepted for publication. [bibtex-entry]


  6. Douglas Gregor, Sibylle Schupp, and David R. Musser. Design Patterns for Library Optimization. Scientific Programming, 11(4):309--320, 2003. [bibtex-entry]


  7. J. Järvi, G. Powell, and A. Lumsdaine. The Lambda Library: unnamed functions in C++. Software---Practice and Experience, 33:259--291, 2003. [bibtex-entry]


  8. Andrew Lumsdaine and Deyun Wu. Krylov-Subspace Acceleration of Waveform Relaxation. SIAM Journal on Numerical Analysis, 41(1):90-111, 2003. [bibtex-entry]


  9. Irina Virtanen, Eeva Ekholm, Tero Aittokallio, Jarno Tähtinen, Jussi Salmi, Jaakko Järvi, Päivi Polo-Kantola, and Olli Polo. State of vigilance, oestrogen replacement therapy, and libid profile as modifiers of nocturnal movement-induced heart rate responces. Clinical Physiology and Functional Imaging, 23(5):293--299, 2003. [bibtex-entry]


2002 (6)
  1. M. Swany and R. Wolski. Building Performance Topologies for Computational Grids. Los Alamos Computer Science Institute (LACSI) Symposium, October 2002. [bibtex-entry]


  2. A. Bassi, M. Beck, G. Fagg, T. Moore, J. Plank, M. Swany, and R. Wolski. The Internet Backplane Protocol: A Study in Resource Sharing. 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid2002), May 2002. [bibtex-entry]


  3. M. Swany and R. Wolski. Representing Dynamic Performance Information in Grid Environments with the Network Weather Service. 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid2002), May 2002. [bibtex-entry]


  4. L. Susan Blackford, James Demmel, Jack Dongarra, Iain Duff, Sven Hammarling, Michael Heroux, Linda Kaufman, Andrew Lumsdaine, Antone Petitet, Roldan Pozo, Karin Remington, and R. Clint Whaley. An updated set of basic linear algebra subprograms (BLAS). ACM Transactions on Mathematical Software (TOMS), 28(2):135--151, 2002. [bibtex-entry]


  5. Ralf Müller, Martin Gaber, and Peter Gottschling. Water Release from Silicate Glass Powders. Glass Science and Technology, 75:92--97, 2002. [bibtex-entry]


  6. Sibylle Schupp, Douglas Gregor, David R. Musser, and Shin-Ming Liu. Semantic and Behavioral Library Transformations. Information and Software Technology, 44(13):797--810, 2002. [bibtex-entry]


2001 (7)
  1. M. Swany and R. Wolski. Data Logistics in Network Computing: The Logistical Session Layer. IEEE Network Computing and Applications, October 2001. [bibtex-entry]


  2. J. Plank, A. Bassi, M. Beck, T. Moore, M. Swany, and R. Wolski. Managing Storage in the Network. IEEE Internet Computing, 5 (5)(50-58), September 2001. [bibtex-entry]


  3. J. Järvi. Tuple types and multiple return values. C/C++ Users Journal, 19:24--35, August 2001. [bibtex-entry]


  4. Jeremy G. Siek and Andrew Lumsdaine. C++ Concept Checking. Dr. Dobb's Journal, June 2001.
    Note: Magazine. [bibtex-entry]


  5. Anthony Skjellum, Diane G. Wooley, Ziyang Lu, Michael Wolf, Purushotham V. Bangalore, Andrew Lumsdaine, Jeffrey M. Squyres, and Brian McCandless. Object-oriented analysis and design of the Message Passing Interface. Concurrency and Computation: Practice and Experience, 13(4):245--292, April 2001. [bibtex-entry]


  6. L.R. Petzold, U. Ascher, H.T. Banks, J. Crowley, W. Gander, L. Greengard, M. Heath, A. Lumsdaine, C. Moler, T. Oden, R. Schnabel, K. Steward, and A. Trefethen. Graduate Education in Computational Science and Engineering. SIAM Review, 43(1):163--177, March 2001. [bibtex-entry]


  7. R. Heiland, M. P. Baker, and D. Tafti. VisBench: A Framework for Remote Data Visualization and Analysis. Springer Verlag Lecture Notes in Computer Science/ICCS, 2074:718-727, 2001. [bibtex-entry]


2000 (4)
  1. Jeremy G. Siek and Andrew Lumsdaine. The Generic Graph Component Library. Dr. Dobb's Journal, September 2000.
    Note: Magazine. [bibtex-entry]


  2. Jeremy Siek and Andrew Lumsdaine. Software Engineering for Peak Performance. C++ Report, pp 23--27, May 2000.
    Note: Magazine. [bibtex-entry]


  3. T. Aittokallio, M. Gyllenberg, J. Järvi, O. Nevalainen, and O. Polo. Detection of high-frequency respiratory movements during sleep. Computer Methods and Programs in Biomedicine, 61(3):171--185, 2000. [bibtex-entry]


  4. Jeremy G. Siek and Andrew Lumsdaine. Advances in Software Tools for Scientific Computing. In , chapter A Modern Framework for Portable High Performance Numerical Linear Algebra. Springer, 2000. [bibtex-entry]


1999 (3)
  1. Jeremy G. Siek and Andrew Lumsdaine. The Matrix Template Library: Generic Components for High-performance Scientific Computing. Computing in Science and Engineering, 1(6):70--78, Nov/dec 1999.
    Note: Magazine. [bibtex-entry]


  2. J. Plank, M. Beck, W. Elwasif, T. Moore, M. Swany, and R. Wolski. The Internet Backplane Protocol: Storage in the Network. Netstore '99: The Network Storage Symposium, October 1999. [bibtex-entry]


  3. J. Järvi. Object-Oriented Model for Partially Separable Functions in Parameter Estimation. Acta Cybernetica, 14(2):285--302, 1999. [bibtex-entry]


1997 (2)
  1. J. Järvi, S. Nyman, M. Komu, and J. J. Forsström. A PC-program for automatic analysis of NMR spectrum series. Computer Methods and Programs in Biomedicine, 52:213--222, 1997. [bibtex-entry]


  2. Andrew Lumsdaine and Deyun Wu. Spectra and Pseudospectra of Waveform Relaxation Operators. SIAM Journal on Scientific Computing, 18(1):286--304, 1997. [bibtex-entry]


1996 (4)
  1. Andrew Lumsdaine, Mark W. Reichelt, Jeffrey M. Squyres, and Jacob K. White. Accelerated Waveform Methods for Parallel Transient Simulation of Semiconductor Devices. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 15(7):716--726, July 1996. [bibtex-entry]


  2. D. Armbruster, E.F. Stone, and R.W. Heiland. Towards analyzing the dynamics of flames. In J. Chadam, M. Golubitsky, W. Langford, and B. Wetton, editors,Pattern Formation: Symmetry Methods and Applications, volume 5, pages 1--17. AMS and Fields Institute Communications, 1996. [bibtex-entry]


  3. Peter Gottschling and Peter-Wolfgang Gräber. Simulation of Stationary and Instationary Ground-Water Flow with a Parallel Hierarchical CG-Algorithm. SAMS, 25:127--144, 1996. [bibtex-entry]


  4. R.W. Heiland R.J. Littlefield and C.R. Macedonia. Virtual Reality Volumetric Display Techniques for Three-Dimensional Medical Ultrasound. In S. Weghorst H. Sieburg and K. Morgan, editors,Medicine Meets Virtual Reality: Health Care in the Information Age. IOS Press and Ohmsha, San Diego, CA, January 1996. [bibtex-entry]


1995 (3)
  1. Peter Gottschling. Fast Sorting Algorithms on Parallel and Sequential Computers in Linear Time. Wissenschaftliche Beiträge zur Informatik, January 1995. [bibtex-entry]


  2. Andrew Lumsdaine and Jacob K. White. Accelerating Dynamic Iteration Methods with Application to Parallel Semiconductor Device Simulation. Numerical Functional Anal. Optimization, 16:395--414, 1995. [bibtex-entry]


  3. Andrew Lumsdaine and Deyun Wu. Spectra and Pseudospectra of Block Toeplitz Matrices. Linear Algebra and its Applications, (272/01--03):103--130, 1995. [bibtex-entry]


1994 (3)
  1. D. Armbruster, R. Heiland, and E. J. Kostelich. KLTool: A tool to analyze spatiotemporal complexity. Chaos, 4(2):421-424, 1994. [bibtex-entry]


  2. Andrew Lumsdaine and Mark W. Reichelt. Decomposition of Space-Time Domains: Accelerated Waveform Methods, with Application to Semiconductor Device Simulation. In D. E. Keyes, Y. Saad, and D. G. Truhlar, editors,Domain-Based Parallelism and Problem Decomposition Methods in Computational Science and Engineering. SIAM, Philadelphia, 1994. [bibtex-entry]


  3. Andrew Lumsdaine and Jacob K. White. Accelerating Dynamic Iteration Methods with Application to Semiconductor Device Simulation. In W. M. Coughran and others, editors,Semiconductors, volume 58-59 of IMA Volumes in Mathematics and its Applications. Springer-Verlag, New York, 1994. [bibtex-entry]


1993 (1)
  1. Andrew Lumsdaine, L. Miguel Silveira, and Jacob White. Massively Parallel Simulation Algorithms for Grid-Based Analog Signal Processors. IEEE Trans. CAD, 12(11):1665--1678, November 1993. [bibtex-entry]


1992 (1)
  1. D. Armbruster, R. Heiland, E. J. Kostelich, and B. Nicolaenko. Phase-space analysis of bursting behavior in Kolmogorov flow. Physica D, 58(1-4):392-401, 1992. [bibtex-entry]


1991 (2)
  1. A. Lumsdaine, J.L. Wyatt, and I.M. Elfadel. Nonlinear Analog Networks for Image Smoothing and Segmentation. Journal of VLSI Signal Processing, 3:53--68, 1991. [bibtex-entry]


  2. A. Lumsdaine, J. Wyatt, and I. Elfadel. Nonlinear Analog Networks for Image Smoothing and Segmentation. In J. Nossek, editor,Parallel Processing on VLSI Arrays. Kluwer, Boston, 1991. [bibtex-entry]


1990 (1)
  1. A. Lumsdaine and J.H. Lang. State Observers for Variable Reluctance Motors. IEEE Transactions on Industrial Electronics, 37(2):133--142, April 1990. [bibtex-entry]



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