Thesis (2)
  1. William E. Byrd. Relational Programming in miniKanren: Techniques, Applications, and Implementations. PhD thesis, Indiana University, September 2009.
    @PhdThesis{byrd09thesis,
    author = {William E. Byrd},
    title = {Relational Programming in miniKanren: Techniques, Applications, and Implementations},
    school = {Indiana University},
    year = 2009,
    month = {September} }


  2. Brian W. Barrett. One-Sided Communication for High Performance Computing Applications. PhD thesis, Indiana University, March 2009.
    @PhdThesis{brbarret_thesis09,
    author = {Brian W. Barrett},
    title = {One-Sided Communication for High Performance Computing Applications},
    school = {Indiana University},
    month = March,
    year = 2009 }


Articles in journals or book chapters (7)
  1. M. H. Swat, S. D. Hester, A. I. Balter, R. W. Heiland, B. L. Zaitlen, and J. A. Glazier. Multicell simulations of development and disease using the CompuCell3D simulation environment. In I. V. Maly, editor,Systems Biology, volume 500 of Methods in Molecular Biology, pages 361--428. Humana Press, Clifton, NJ, 2009.
    @incollection{MMB+09,
    author = {M.~H. Swat and S.~D. Hester and A.~I. Balter and R.~W. Heiland and B.~L. Zaitlen and J.~A. Glazier},
    editor = {I.~V. Maly},
    year = 2009,
    pages = {361--428},
    title = {Multicell simulations of development and disease using the CompuCell3D simulation environment},
    booktitle = {Systems Biology},
    series = {Methods in Molecular Biology},
    volume = 500,
    publisher = {Humana Press},
    url = {http://www.springerlink.com/content/m3751486766r2495/},
    address = {Clifton, NJ} }


  2. Peter Gottschling, David S. Wise, and Adwait Joshi. Generic Support of Algorithmic and Structural Recursion for Scientific Computing. The International Journal of Parallel, Emergent and Distributed Systems (IJPEDS), 24(6):479--503, December 2009.
    @ARTICLE{pg_ijpeds_recursion,
    author = {Peter Gottschling and David S. Wise and Adwait Joshi},
    title = {Generic Support of Algorithmic and Structural Recursion for Scientific Computing},
    journal = {The International Journal of Parallel, Emergent and Distributed Systems ({IJPEDS})},
    year = {2009},
    volume = {24},
    pages = {479--503},
    number = {6},
    month = {December},
    doi = {http://doi.acm.org/10.1080/17445760902758560} }


  3. T. Hoefler, T. Schneider, and A. Lumsdaine. The Effect of Network Noise on Large-Scale Collective Communications. Parallel Processing Letters (PPL), Dec. 2009.
    @article{hoefler-collnetnoise,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{The Effect of Network Noise on Large-Scale Collective Communications}},
    journal={Parallel Processing Letters (PPL)},
    year={2009},
    month={Dec.},
    publisher={World Scientific Publishing Company},
    url={http://www.unixer.de/~htor/publications/},
    }


  4. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory (SIMPAT), 17(9):1511-1521, Oct. 2009.
    @article{hoefler-loggp-colls,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.}},
    journal={Elsevier Journal of Simulation Modelling Practice and Theory (SIMPAT)},
    year={2009},
    month={Oct.},
    pages={1511-1521},
    volume={17},
    number={9},
    publisher={Elsevier},
    issn={1569-190X},
    url={http://www.unixer.de/~htor/publications/},
    }


  5. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory, Jun. 2009.
    @article{hoefler-loggp-colls,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.}},
    journal={Elsevier Journal of Simulation Modelling Practice and Theory},
    year={2009},
    month={Jun.},
    publisher={Elsevier},
    url={http://www.unixer.de/~htor/publications/},
    }


  6. J. Huang, J. Jia, and B. Zhang. FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions. Computer Physics Communications, 180:2331-2338, 2009.
    @Article{zhang416_2009_fmm-yukawa,
    author={J. Huang and J. Jia and B. Zhang},
    title={{FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions}},
    journal={{Computer Physics Communications}},
    volume={180},
    year={2009},
    pages={2331-2338} }


  7. Marcin Zalewski and Sibylle Schupp. A Semantic Definition of Separate Type Checking in C++ with Concepts. Journal of Object Technology, 8(5):105--132, 2009.
    Note: Extended version available in Zalewski's PhD thesis.
    @Article{Zalewski_semantic_2009,
    author = {Marcin Zalewski and Sibylle Schupp},
    title = {A Semantic Definition of Separate Type Checking in {C++} with Concepts},
    journal = {Journal of Object Technology},
    year = 2009,
    volume = 8,
    number = 5,
    pages = {105--132},
    note = {Extended version available in Zalewski's PhD thesis.},
    url = {http://www.jot.fm/issues/issue_2009_07/article2/index.html},
    pdf = {http://www.jot.fm/issues/issue_2009_07/article2.pdf} }


Conference articles (35)
  1. P. Kambadur, A. Gupta, T. Hoefler, and A. Lumsdaine. Demand-driven Execution of Static Directed Acyclic Graphs Using Task Parallelism. In , Dec. 2009.
    Note: 2009 International Conference on High Performance Computing (HIPC-2009).
    @inproceedings{kambadur-pfunc,
    author={P. Kambadur and A. Gupta and T. Hoefler and A. Lumsdaine},
    title={{Demand-driven Execution of Static Directed Acyclic Graphs Using Task Parallelism}},
    year={2009},
    month={Dec.},
    location={Kochi, India},
    note={2009 International Conference on High Performance Computing (HIPC-2009)},
    url={http://www.unixer.de/~htor/publications/},
    }


  2. Prabhanjan Kambadur, Torsten Hoefler, Anshul Gupta, and Andrew Lumsdaine. Demand-driven Execution of Static Direct Acyclic Graphs Using Task Parallelism. In International Conference on High Performance Computing (HiPC), Kochi, India, December 2009.
    @InProceedings{kambadur09:dag,
    author = {Prabhanjan Kambadur and Torsten Hoefler and Anshul Gupta and Andrew Lumsdaine},
    title = {Demand-driven Execution of Static Direct Acyclic Graphs Using Task Parallelism},
    booktitle = {International Conference on High Performance Computing (HiPC)},
    year = 2009,
    address = {Kochi, India},
    month = {December},
    thanks = {This work was supported by NSF grants EIA-0202048 and EIA-0131354 and a grant by the Lilly Endowment.} }


  3. Prabhanjan Kambadur, Anshul Gupta, Amol Ghoting, Haim Avron, and Andrew Lumsdaine. PFunc: Modern Task Parallelism For Modern High Performance Computing. In Proceedings of the 2008 ACM/IEEE conference on Supercomputing (SC), Portland, Oregon, November 2009.
    @InProceedings{kambadur09:pfunc,
    author = {Prabhanjan Kambadur and Anshul Gupta and Amol Ghoting and Haim Avron and Andrew Lumsdaine},
    title = {PFunc: Modern Task Parallelism For Modern High Performance Computing},
    booktitle = {Proceedings of the 2008 ACM/IEEE conference on Supercomputing (SC)},
    year = 2009,
    address = {Portland, Oregon},
    month = {November},
    thanks = {This work was supported by NSF grants EIA-0202048 and EIA-0131354 and a grant by the Lilly Endowment.} }


  4. Jeremiah James Willcock, Andrew Lumsdaine, and Daniel J. Quinlan. Reusable, Generic Program Analyses and Transformations. In GPCE, New York, NY, USA, pages 5--14, October 2009. ACM.
    @inproceedings{willcock09reusable,
    author = {Willcock, Jeremiah James and Lumsdaine, Andrew and Quinlan, Daniel J.},
    title = {Reusable, Generic Program Analyses and Transformations},
    booktitle = {GPCE},
    year = {2009},
    month = oct,
    isbn = {978-1-60558-494-2},
    pages = {5--14},
    location = {Denver, Colorado, USA},
    doi = {http://doi.acm.org/10.1145/1621607.1621611},
    publisher = {ACM},
    address = {New York, NY, USA},
    }


  5. T. Hoefler, A. Lumsdaine, and J. Dongarra. Towards Efficient MapReduce Using MPI. In Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Sep. 2009. Springer.
    @inproceedings{hoefler-map-reduce,
    author={T. Hoefler and A. Lumsdaine and J. Dongarra},
    title={{Towards Efficient MapReduce Using MPI}},
    year={2009},
    month={Sep.},
    booktitle={Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting},
    location={Helsinki, Finland},
    publisher={Springer},
    url={http://www.unixer.de/~htor/publications/},
    }


  6. T. Hoefler, A. Lumsdaine, and J. Dongarra. Towards Efficient MapReduce Using MPI. In Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Sep. 2009. Springer.
    @inproceedings{hoefler-map-reduce,
    author={T. Hoefler and A. Lumsdaine and J. Dongarra},
    title={{Towards Efficient MapReduce Using MPI}},
    year={2009},
    month={Sep.},
    booktitle={Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting},
    location={Helsinki, Finland},
    publisher={Springer},
    url={http://www.unixer.de/~htor/publications/},
    }


  7. T. Hoefler, C. Siebert, and A. Lumsdaine. Group Operation Assembly Language - A Flexible Way to Express Collective Communication. In In proceedings of the 38th International Conference on Parallel Processing (ICPP-2009), Sep. 2009.
    @inproceedings{hoefler-goal,
    author={T. Hoefler and C. Siebert and A. Lumsdaine},
    title={{Group Operation Assembly Language - A Flexible Way to Express Collective Communication}},
    year={2009},
    month={Sep.},
    location={Vienna, Austria},
    booktitle={In proceedings of the 38th International Conference on Parallel Processing (ICPP-2009)},
    url={http://www.unixer.de/~htor/publications/},
    }


  8. T. Hoefler, C. Siebert, and A. Lumsdaine. Group Operation Assembly Language - A Flexible Way to Express Collective Communication. In ICPP-2009 - The 38th International Conference on Parallel Processing, Sep. 2009. IEEE.
    @inproceedings{hoefler-goal,
    author={T. Hoefler and C. Siebert and A. Lumsdaine},
    title={{Group Operation Assembly Language - A Flexible Way to Express Collective Communication}},
    year={2009},
    month={Sep.},
    booktitle={ICPP-2009 - The 38th International Conference on Parallel Processing},
    location={Vienna, Austria},
    publisher={IEEE},
    isbn={978-0-7695-3802-0},
    url={http://www.unixer.de/~htor/publications/},
    }


  9. Prabhanjan Kambadur, Amol Ghoting, Anshul Gupta, and Andrew Lumsdaine. Extending Task Parallelism For Frequent Pattern Mining. In Proceedings of the International Conference on Parallel Computing (ParCO), Lyon, France, September 2009.
    @InProceedings{kambadur09:frequent_pattern_mining,
    author = {Prabhanjan Kambadur and Amol Ghoting and Anshul Gupta and Andrew Lumsdaine},
    title = {Extending Task Parallelism For Frequent Pattern Mining},
    booktitle = {Proceedings of the International Conference on Parallel Computing (ParCO)},
    year = 2009,
    address = {Lyon, France},
    month = {September},
    thanks = {This work was supported by NSF grants EIA-0202048 and EIA-0131354 and a grant by the Lilly Endowment.} }


  10. Andrew Friedley, Christopher Mueller, Ben Martin, and Andrew Lumsdaine. High-Performance Code Generation Using CorePy. In SciPy 2009, August 2009.
    @inproceedings{friedley-corepy-scipy09,
    author = {Andrew Friedley and Christopher Mueller and Ben Martin and Andrew Lumsdaine},
    title = {High-Performance Code Generation Using {CorePy}},
    booktitle = {SciPy 2009},
    month = {August},
    year = {2009},
    location = {Pasadena, CA} }


  11. T. Hoefler, T. Schneider, and A. Lumsdaine. Optimized Routing for Large-Scale InfiniBand Networks. In 17th Annual IEEE Symposium on High Performance Interconnects (HOTI 2009), Aug. 2009.
    @inproceedings{hoefler-sssp-routing,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{Optimized Routing for Large-Scale InfiniBand Networks}},
    year={2009},
    month={Aug.},
    booktitle={17th Annual IEEE Symposium on High Performance Interconnects (HOTI 2009)},
    location={New York, NY},
    url={http://www.unixer.de/~htor/publications/},
    }


  12. Daniel Lincke, Patrik Jansson, Marcin Zalewski, and Cezar Ionescu. Generic Libraries in C++ with Concepts from High-Level Domain Descriptions in Haskell. In IFIP TC 2 Working Conference on Domain-Specific Languages, pages 236--261, July 2009.
    @inproceedings{lincke_generic_2009,
    title = {Generic Libraries in {C++} with Concepts from High-Level Domain Descriptions in {Haskell}},
    doi = {http://dx.doi.org/10.1007/978-3-642-03034-5_12},
    booktitle = {{IFIP} {TC} 2 Working Conference on {Domain-Specific} Languages},
    author = {Daniel Lincke and Patrik Jansson and Marcin Zalewski and Cezar Ionescu},
    month = jul,
    year = 2009,
    pages = {236--261} }


  13. Andreas Saebjoernsen, Jeremiah Willcock, Thomas Panas, Dan Quinlan, and Zhendong Su. Detecting Code Clones in Binary Executables. In International Symposium on Software Testing and Analysis (ISSTA), July 2009.
    @inproceedings{saebjoernsen09detecting,
    author = {Andreas Saebjoernsen and Jeremiah Willcock and Thomas Panas and Dan Quinlan and Zhendong Su},
    title = {Detecting Code Clones in Binary Executables},
    booktitle = {International Symposium on Software Testing and Analysis (ISSTA)},
    month=jul,
    year = 2009,
    }


  14. Joshua Hursey, Timothy I. Mattox, and Andrew Lumsdaine. Interconnect Agnostic Checkpoint/Restart in Open MPI. In Proceedings of the Eighteenth International Symposium on High Performance Distributed Computing (HPDC 2009), June 2009. ACM.
    Keywords: Open MPI, high performance computing, rollback-recovery, MPI, fault tolerance, checkpoint/restart, High Speed Interconnect, InfiniBand, Shared Memory, Myrinet, Checkpoint Coordination Protocol.
    @InProceedings{hursey:hpdc09:Interconnect-Agnostic-CR,
    author = {Joshua Hursey and Timothy I. Mattox and Andrew Lumsdaine},
    title = {Interconnect Agnostic Checkpoint/Restart in {O}pen {MPI}},
    booktitle = {Proceedings of the Eighteenth International Symposium on {High Performance Distributed Computing (HPDC 2009)}},
    year = 2009,
    month = {June},
    location = {Munich, Germany},
    publisher = {ACM},
    url = {http://doi.acm.org/10.1145/1551609.1551619},
    keywords = "Open MPI, high performance computing, rollback-recovery, MPI, fault tolerance, checkpoint/restart, High Speed Interconnect, InfiniBand, Shared Memory, Myrinet, Checkpoint Coordination Protocol",
    thanks = {Supported by a grant from the Lilly Endowment and National Science Foundation grants NSF ANI-0330620, CDA-0116050, and EIA-0202048.} }


  15. T. Hoefler, T. Schneider, and A. Lumsdaine. A Power-Aware, Application-Based, Performance Study Of Modern Commodity Cluster Interconnection Networks. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), CAC Workshop, May 2009.
    @inproceedings{hoefler-power-networks,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{A Power-Aware, Application-Based, Performance Study Of Modern Commodity Cluster Interconnection Networks}},
    year={2009},
    month={May},
    booktitle={Proceedings of the 23rd IEEE International Parallel \& Distributed Processing Symposium (IPDPS), CAC Workshop},
    location={Rome, Italy},
    url={http://www.unixer.de/~htor/publications/},
    }


  16. T. Hoefler, T. Schneider, and A. Lumsdaine. The Impact of Network Noise at Large-Scale Communication Performance. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), LSPP Workshop, May 2009.
    @inproceedings{hoefler-netnoise,
    author={T. Hoefler and T. Schneider and A. Lumsdaine},
    title={{The Impact of Network Noise at Large-Scale Communication Performance}},
    year={2009},
    month={May},
    booktitle={Proceedings of the 23rd IEEE International Parallel \& Distributed Processing Symposium (IPDPS), LSPP Workshop},
    location={Rome, Italy},
    url={http://www.unixer.de/~htor/publications/},
    }


  17. T. Hoefler and J. L. Träff. Sparse Collective Operations for MPI. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), HIPS Workshop, May 2009.
    @inproceedings{hoefler-sparsecolls-hips,
    author={T. Hoefler and J. L. Tr{\"a}ff},
    title={{Sparse Collective Operations for MPI}},
    year={2009},
    month={May},
    booktitle={Proceedings of the 23rd IEEE International Parallel \& Distributed Processing Symposium (IPDPS), HIPS Workshop},
    location={Rome, Italy},
    url={http://www.unixer.de/~htor/publications/},
    }


  18. C. Kaiser, T. Hoefler, B. Bierbaum, and T. Bemmerl. Implementation and Analysis of Nonblocking Collective Operations on SCI Networks. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), CAC Workshop, May 2009.
    @inproceedings{kaiser-nbc-sci,
    author={C. Kaiser and T. Hoefler and B. Bierbaum and T. Bemmerl},
    title={{Implementation and Analysis of Nonblocking Collective Operations on SCI Networks}},
    year={2009},
    month={May},
    booktitle={Proceedings of the 23rd IEEE International Parallel \& Distributed Processing Symposium (IPDPS), CAC Workshop},
    location={Rome, Italy},
    url={http://www.unixer.de/~htor/publications/},
    }


  19. J. Mueller, T. Schneider, J. Domke, R. Geyer, M. Haesing, T. Hoefler, S. Hoehlig, G. Juckeland, A. Lumsdaine, M. Mueller, and W. Nagel. Cluster Challenge 2008: Optimizing Cluster Configuration and Applications to Maximize Power Efficiency. In 10th LCI International Conference on High-Performance Clustered Computing, Mar. 2009.
    Note: 2nd best paper.
    @inproceedings{mueller-cc08,
    author={J. Mueller and T. Schneider and J. Domke and R. Geyer and M. Haesing and T. Hoefler and S. Hoehlig and G. Juckeland and A. Lumsdaine and M. Mueller and W. Nagel},
    title={{Cluster Challenge 2008: Optimizing Cluster Configuration and Applications to Maximize Power Efficiency}},
    year={2009},
    month={Mar.},
    location={Boulder, CO},
    booktitle={10th LCI International Conference on High-Performance Clustered Computing},
    note={2nd best paper},
    url={http://www.unixer.de/~htor/publications/},
    }


  20. Jeremy G. Siek, Ronald Garcia, and Walid Taha. Exploring the Design Space of Higher-Order Casts. In European Symposium on Programming, March 2009.
    @inproceedings{Siek:2009rt,
    Author = {Jeremy G. Siek and Ronald Garcia and Walid Taha},
    Booktitle = {European Symposium on Programming},
    Date-Added = {2009-03-19 22:57:36 -0600},
    Date-Modified = {2009-03-19 22:58:12 -0600},
    Month = {March},
    Title = {Exploring the Design Space of Higher-Order Casts},
    Year = {2009} }


  21. Geoffrey Belter, E. R. Jessup, Ian Karlin, and Jeremy G. Siek. Automating the Generation of Composed Linear Algebra Kernels. In International Conference for High Performance Computing, Networking, Storage and Analysis, 2009.
    @inproceedings{Belter:2009fc,
    Author = {Geoffrey Belter and E. R. Jessup and Ian Karlin and Jeremy G. Siek},
    Booktitle = {International Conference for High Performance Computing, Networking, Storage and Analysis},
    Date-Added = {2009-08-26 23:06:03 -0600},
    Date-Modified = {2009-08-26 23:08:04 -0600},
    Title = {Automating the Generation of Composed Linear Algebra Kernels},
    Year = {2009} }


  22. Joseph A. Cottam and Andrew Lumsdaine. Algebraic Guide Generation. In 13th International Conference on Information Visualzation (IV'09), 2009.
    Keywords: Visualization.
    @inproceedings{Cottam2008AlgebraicGuide,
    Author = {Joseph A. Cottam and Andrew Lumsdaine},
    Booktitle = {13th International Conference on Information Visualzation (IV'09)},
    Date-Added = {2009-12-16 11:25:14 -0700},
    Date-Modified = {2011-01-06 15:05:05 -0500},
    Keywords = {Visualization},
    Thanks = {This work was supported in part by a grant from the Lilly Endowment. The National Science Foundation supported this research under a grant numbered EIA-0202048.},
    Title = {Algebraic Guide Generation},
    Year = {2009} }


  23. Ronald Garcia and Andrew Lumsdaine. Toward foundations for type-reflective metaprogramming. In GPCE '09: Proceedings of the eighth international conference on Generative programming and component engineering, New York, NY, USA, pages 25--34, 2009. ACM.
    @inproceedings{garcia09meta,
    author = {Garcia, Ronald and Lumsdaine, Andrew},
    title = {Toward foundations for type-reflective metaprogramming},
    booktitle = {{GPCE} '09: Proceedings of the eighth international conference on Generative programming and component engineering},
    year = 2009,
    isbn = {978-1-60558-494-2},
    pages = {25--34},
    location = {Denver, Colorado, USA},
    doi = {http://doi.acm.org/10.1145/1621607.1621613},
    publisher = {ACM},
    address = {New York, NY, USA},
    }


  24. Ronald Garcia, Andrew Lumsdaine, and Amr Sabry. Lazy evaluation and delimited control. In POPL '09: Proceedings of the 36th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages, New York, NY, USA, pages 153--164, 2009. ACM.
    @inproceedings{garcia09:call-by-need,
    author = {Garcia, Ronald and Lumsdaine, Andrew and Sabry, Amr},
    title = {Lazy evaluation and delimited control},
    booktitle = {{POPL} '09: Proceedings of the 36th annual {ACM} {SIGPLAN-SIGACT} symposium on Principles of programming languages},
    year = 2009,
    isbn = {978-1-60558-379-2},
    pages = {153--164},
    location = {Savannah, GA, USA},
    doi = {http://doi.acm.org/10.1145/1480881.1480903},
    publisher = {ACM},
    address = {New York, NY, USA},
    thanks = {Lilly Endowment, NSF CCF-0702717} }


  25. Todor G. Georgiev, Andrew Lumsdaine, and Sergio Goma. High Dynamic Range Image Capture with Plenoptic 2.0 Camera. In Signal Recovery and Synthesis, pages SWA7P, 2009. Optical Society of America.
    Keywords: Detectors, Cameras, Imaging systems, Photography.
    @inproceedings{Georgiev:09,
    author = {Todor G. Georgiev and Andrew Lumsdaine and Sergio Goma},
    booktitle = {Signal Recovery and Synthesis},
    journal = {Signal Recovery and Synthesis},
    keywords = {Detectors; Cameras; Imaging systems; Photography},
    pages = {SWA7P},
    publisher = {Optical Society of America},
    title = {High Dynamic Range Image Capture with Plenoptic 2.0 Camera},
    year = 2009,
    url = {http://www.opticsinfobase.org/abstract.cfm?URI=SRS-2009-SWA7P},
    }


  26. Todor G. Georgiev and Andrew Lumsdaine. Resolution in Plenoptic Cameras. In Computational Optical Sensing and Imaging, pages CTuB3, 2009. Optical Society of America.
    Keywords: Geometric optics, Matrix methods in paraxial optics, Imaging systems, Photography.
    @inproceedings{Georgiev:09,
    author = {Todor G. Georgiev and Andrew Lumsdaine},
    booktitle = {Computational Optical Sensing and Imaging},
    journal = {Computational Optical Sensing and Imaging},
    keywords = {Geometric optics ; Matrix methods in paraxial optics; Imaging systems; Photography},
    pages = {CTuB3},
    publisher = {Optical Society of America},
    title = {Resolution in Plenoptic Cameras},
    year = 2009,
    url = {http://www.opticsinfobase.org/abstract.cfm?URI=COSI-2009-CTuB3},
    }


  27. Todor G. Georgiev and Andrew Lumsdaine. Superresolution with Plenoptic 2.0 Cameras. In Signal Recovery and Synthesis, pages STuA6, 2009. Optical Society of America.
    Keywords: Image processing, Superresolution, Imaging systems, Multiframe image processing.
    @inproceedings{Georgiev:09,
    author = {Todor G. Georgiev and Andrew Lumsdaine},
    booktitle = {Signal Recovery and Synthesis},
    journal = {Signal Recovery and Synthesis},
    keywords = {Image processing; Superresolution; Imaging systems; Multiframe image processing},
    pages = {STuA6},
    publisher = {Optical Society of America},
    title = {Superresolution with Plenoptic 2.0 Cameras},
    year = 2009,
    url = {http://www.opticsinfobase.org/abstract.cfm?URI=SRS-2009-STuA6},
    }


  28. T. Georgiev and A. Lumsdaine. The Focused Plenoptic Camera. In Proceedings International Conference on Computational Photography, 2009.
    @InProceedings{lumsdaine09:_focused,
    author = {T. Georgiev and A. Lumsdaine},
    title = {The Focused Plenoptic Camera},
    booktitle = {Proceedings International Conference on Computational Photography},
    year = 2009 }


  29. Justin E. Gottschlich, Jeremy G. Siek, Manish Vachharajani, Dwight Y. Winkler, and Daniel A. Connors. An efficient lock-aware transactional memory implementation. In Proceedings of the 4th workshop on the Implementation, Compilation, Optimization of Object-Oriented Languages and Programming Systems, ICOOOLPS '09, New York, NY, USA, pages 10--17, 2009. ACM.
    @inproceedings{Gottschlich:2009vn,
    Address = {New York, NY, USA},
    Author = {Gottschlich, Justin E. and Siek, Jeremy G. and Vachharajani, Manish and Winkler, Dwight Y. and Connors, Daniel A.},
    Booktitle = {Proceedings of the 4th workshop on the Implementation, Compilation, Optimization of Object-Oriented Languages and Programming Systems},
    Pages = {10--17},
    Publisher = {ACM},
    Series = {ICOOOLPS '09},
    Title = {An efficient lock-aware transactional memory implementation},
    Year = {2009} }


  30. Peter Gottschling and Dag Lindbo. Generic compressed sparse matrix insertion: algorithms and implementations in MTL4 and FEniCS. In POOSC '09: Proceedings of the 8th workshop on Parallel/High-Performance Object-Oriented Scientific Computing, New York, NY, USA, pages 1--8, 2009. ACM.
    @INPROCEEDINGS{pg_poosc_insertion,
    author = {Gottschling, Peter and Lindbo, Dag},
    title = {Generic compressed sparse matrix insertion: algorithms and implementations in {MTL4} and {FEniCS}},
    booktitle = {POOSC '09: Proceedings of the 8th workshop on Parallel/High-Performance Object-Oriented Scientific Computing},
    year = {2009},
    pages = {1--8},
    address = {New York, NY, USA},
    publisher = {ACM},
    doi = {http://doi.acm.org/10.1145/1595655.1595657},
    isbn = {978-1-60558-547-5},
    location = {Genova, Italy} }


  31. R. Gupta, P. Beckman, B. Park, E. Lusk, P. Hargrove, A. Geist, D. Panda, A. Lumsdaine, and J. Dongarra. CIFTS: A Coordinated Infrastructure for Fault-Tolerant Systems. In Interntional Conference on Parallel Processing (ICPP), pages 237--245, 2009.
    @InProceedings{lumsdaine09:_CIFTS,
    author = {R. Gupta and P. Beckman and B. Park and E. Lusk and P. Hargrove and A. Geist and D. Panda and A. Lumsdaine and J. Dongarra},
    title = {CIFTS: A Coordinated Infrastructure for Fault-Tolerant Systems},
    booktitle = {Interntional Conference on Parallel Processing (ICPP)},
    year = 2009,
    pages = {237--245} }


  32. Andrew W. Keep, Michael D. Adams, Lindsey Kuper, William E. Byrd, and Daniel P. Friedman. A Pattern-matcher for miniKanren -or- How to Get into Trouble with CPS Macros. In John Clements, editor, Proc. of the 2009 Workshop on Scheme and Functional Programming, Boston, Mass., Aug. 22, 2009, Cal Poly Technical Report CPSLO-CSC-09-03, pages 37--45, 2009.
    @inproceedings{cpsmacrotrouble09,
    author = {Andrew W. Keep and Michael D. Adams and Lindsey Kuper and William E. Byrd and Daniel P. Friedman},
    editor = {John Clements},
    pages = "37--45",
    booktitle = {Proc. of the 2009 Workshop on Scheme and Functional Programming, Boston, Mass., Aug. 22, 2009},
    title = "A Pattern-matcher for miniKanren -or- How to Get into Trouble with CPS Macros",
    series = {Cal Poly Technical Report CPSLO-CSC-09-03},
    year = {2009} }


  33. Boyana Norris, Albert Hartono, Elizabeth Jessup, and Jeremy G. Siek. Generating Empirically Optimized Composed Matrix Kernels from MATLAB Prototypes. In International Conference on Computational Science, 2009.
    @inproceedings{Norris:2009fx,
    Author = {Boyana Norris and Albert Hartono and Elizabeth Jessup and Jeremy G. Siek},
    Booktitle = {International Conference on Computational Science},
    Date-Added = {2009-08-27 10:10:14 -0600},
    Date-Modified = {2009-08-27 10:11:12 -0600},
    Title = {Generating Empirically Optimized Composed Matrix Kernels from MATLAB Prototypes},
    Year = {2009} }


  34. Jeremy G. Siek and Philip Wadler. Threesomes, with and without blame. In Proceedings for the 1st workshop on Script to Program Evolution, STOP '09, New York, NY, USA, pages 34--46, 2009. ACM.
    @inproceedings{Siek:2009ys,
    Address = {New York, NY, USA},
    Author = {Siek, Jeremy G. and Wadler, Philip},
    Booktitle = {Proceedings for the 1st workshop on Script to Program Evolution},
    Pages = {34--46},
    Publisher = {ACM},
    Series = {STOP '09},
    Title = {Threesomes, with and without blame},
    Year = {2009} }


  35. Angela Yun Zhu, Walid Taha, Robert Cartwright, Matthieu Martel, and Jeremy G. Siek. In Pursuit of Real Answers. In Proceedings of the 2009 International Conference on Embedded Software and Systems, Washington, DC, USA, pages 115--122, 2009. IEEE Computer Society.
    @inproceedings{Zhu:2009uq,
    Address = {Washington, DC, USA},
    Author = {Zhu, Angela Yun and Taha, Walid and Cartwright, Robert and Martel, Matthieu and Siek, Jeremy G.},
    Booktitle = {Proceedings of the 2009 International Conference on Embedded Software and Systems},
    Pages = {115--122},
    Publisher = {IEEE Computer Society},
    Title = {In Pursuit of Real Answers},
    Year = {2009} }


Internal reports (5)
  1. Abhishek Kulkarni, Bryce Himebaugh, and Steven D Johnson. Dynamic resource configuration and control for an autonomous robotic vehicle. Technical report, October 2009.
    Note: Work-in-Progress (WIP) Paper.
    @techreport{kulkarni09:cart,
    Author = {Abhishek Kulkarni and Bryce Himebaugh and Steven D Johnson},
    Booktitle = {The 4th International Workshop on Plan 9 (IWP9 2009)},
    Month = oct,
    Note = {Work-in-Progress (WIP) Paper},
    Title = {Dynamic resource configuration and control for an autonomous robotic vehicle},
    Year = {2009} }


  2. T. Hoefler on behalf of the MPI Forum. MPI: A Message-Passing Interface Standard -- Working-Draft for Nonblocking Collective Operations. Technical report, MPI Forum, Apr. 2009.
    @techreport{nbc-proposal-rev-6,
    author={T. Hoefler on behalf of the MPI Forum},
    title={{MPI: A Message-Passing Interface Standard -- Working-Draft for Nonblocking Collective Operations}},
    institution={MPI Forum},
    year={2009},
    month={Apr.},
    publisher={MPI Forum},
    url={http://www.unixer.de/~htor/publications/},
    }


  3. T. Schneider, T. Hoefler, and A. Lumsdaine. ORCS: An Oblivious Routing Congestion Simulator. Technical report 675, Indiana University, Feb. 2009.
    @techreport{orcs-tr,
    author={T. Schneider and T. Hoefler and A. Lumsdaine },
    title={{ORCS: An Oblivious Routing Congestion Simulator}},
    institution={Indiana University},
    year={2009},
    month={Feb.},
    number={675},
    publisher={Indiana University Computer Science},
    url={http://www.unixer.de/~htor/publications/},
    }


  4. T. Schneider, T. Hoefler, and A. Lumsdaine. ORCS: An Oblivious Routing Congestion Simulator. Technical report 675, Indiana University, Feb. 2009.
    @techreport{orcs-tr,
    author={T. Schneider and T. Hoefler and A. Lumsdaine },
    title={{ORCS: An Oblivious Routing Congestion Simulator}},
    institution={Indiana University},
    year={2009},
    month={Feb.},
    number={675},
    publisher={Indiana University Computer Science},
    url={http://www.unixer.de/~htor/publications/},
    }


  5. D. Gregor, T. Hoefler, B. Barrett, and A. Lumsdaine. Fixing Probe for Multi-Threaded MPI Applications. Technical report 674, Indiana University, Jan. 2009.
    @techreport{mprobe-proposal-rev4,
    author={D. Gregor and T. Hoefler and B. Barrett and A. Lumsdaine },
    title={{Fixing Probe for Multi-Threaded MPI Applications}},
    institution={Indiana University},
    year={2009},
    month={Jan.},
    number={674},
    publisher={Indiana University Computer Science},
    url={http://www.unixer.de/~htor/publications/},
    }


Posters and Presentations (13)
  1. Joshua Hursey, Jeffrey M. Squyres, Abhishek Kulkarni, and Andrew Lumsdaine. Open MPI Tutorial. Tutorial at the Indiana University booth at the ACM/IEEE SC09 Conference, Portland, Oregon, November 2009.
    @misc{kulkarni09:openmpi_tutorial,
    Author = {Joshua Hursey and Jeffrey M. Squyres and Abhishek Kulkarni and Andrew Lumsdaine},
    Howpublished = {Tutorial at the Indiana University booth at the ACM/IEEE SC09 Conference, Portland, Oregon},
    Month = nov,
    Title = {Open {MPI} Tutorial},
    Year = {2009} }


  2. Abhishek Kulkarni. Process Resilience in Open MPI using the CIFTS Fault Tolerance Backplane: A POV-Ray Demonstration. Presentation and Demo at the Argonne National Laboratory booth at the ACM/IEEE SC09 Conference, Portland, Oregon, November 2009.
    @misc{kulkarni09:povray_demo,
    Author = {Abhishek Kulkarni},
    Howpublished = {Presentation and Demo at the Argonne National Laboratory booth at the ACM/IEEE SC09 Conference, Portland, Oregon},
    Month = nov,
    Title = {Process Resilience in Open {MPI} using the {CIFTS} Fault Tolerance Backplane: {A} {POV}-Ray Demonstration},
    Year = {2009} }


  3. R. Heiland and J.A. Glazier. Multi-Cell Simulations of Gastrulation and Somitogenesis Using CompuCell3D. International Conference on Computational Bioengineering (ICCB), Bertinoro, Italy, September 2009.
    @Misc{heiland_ICCB_2009,
    author = {R. Heiland and J.A. Glazier},
    title = {Multi-Cell Simulations of Gastrulation and Somitogenesis Using CompuCell3D},
    howpublished = {International Conference on Computational Bioengineering (ICCB), Bertinoro, Italy},
    year = {2009},
    month = {September},
    url = {http://www.iccb2009.org/img/programma.pdf} }


  4. Prabhanjan Kambadur. Extending Task Parallelism For Frequent Pattern Mining. International Conference on Parallel Computing, September 2009.
    @Misc{kambadur09:parco_presentation,
    author = {Prabhanjan Kambadur},
    title = {Extending Task Parallelism For Frequent Pattern Mining},
    howpublished = {International Conference on Parallel Computing},
    month = {September},
    year = 2009 }


  5. Prabhanjan Kambadur. An OpenCL Tutorial. Invited talk at IBM T J Watson Research Center, August 2009.
    @Misc{kambadur09:opencl,
    author = {Prabhanjan Kambadur},
    title = {An OpenCL Tutorial},
    howpublished = {Invited talk at IBM T J Watson Research Center},
    month = {August},
    year = 2009 }


  6. Prabhanjan Kambadur. Extending Task Parallelism For Frequent Pattern Mining. IBM T J Watson Research Center, August 2009.
    @Misc{kambadur09:IBM_presentation,
    author = {Prabhanjan Kambadur},
    title = {Extending Task Parallelism For Frequent Pattern Mining},
    howpublished = {IBM T J Watson Research Center},
    month = {August},
    year = 2009 }


  7. Prabhanjan Kambadur. PFunc: Modern Task Parallelism For Modern High Performance Computing. IBM T J Watson Research Center, July 2009.
    @Misc{kambadur09:pfunc_modern_task_parallelism,
    author = {Prabhanjan Kambadur},
    title = {{PFunc: Modern Task Parallelism For Modern High Performance Computing}},
    howpublished = {IBM T J Watson Research Center},
    month = {July},
    year = 2009 }


  8. Joseph A. Cottam and Andrew Lumsdaine. GuideMe: Automatic Generation of Legends and Guides, May 2009.
    @misc{Cottam_poster_2009GuideMe,
    Author = {Joseph A. Cottam and Andrew Lumsdaine},
    Cites = {Poster at the Indiana University, School of Informatics poster session. Honorable mention award.},
    Date-Added = {2009-05-21 14:47:53 -0400},
    Date-Modified = {2012-06-06 19:57:18 +0000},
    Month = {May},
    Title = {GuideMe: Automatic Generation of Legends and Guides},
    Year = {2009} }


  9. Peter Gottschling. Scientific Computing in Silicon (in German). Presentation at Silicon Saxony Day, Dresden, May 2009.
    @MISC{gottschling09:silicon_saxony,
    author = {Peter Gottschling},
    title = {Scientific Computing in Silicon (in German)},
    howpublished = {Presentation at Silicon Saxony Day, Dresden},
    month = {May},
    year = {2009} }


  10. B. Zaitlen and R. Heiland. Spatial Geometry in CompuCell3D. Presentation at the CellML-SBGN-SBO-BioPAX-MIASE Workshop, Auckland, New Zealand, April 2009.
    @Misc{zaitlen09:cc3d_cellml_presentation,
    author = {B. Zaitlen and R. Heiland},
    title = {Spatial Geometry in CompuCell3D},
    howpublished = {Presentation at the CellML-SBGN-SBO-BioPAX-MIASE Workshop, Auckland, New Zealand},
    month = {April},
    year = 2009 }


  11. Andrew Friedley, Christopher Mueller, and Andrew Lumsdaine. Presenting CorePy: A Synthetic Programming Environment For Python, March 2009.
    Note: Poster Presentation at CGO 2009.
    @Misc{friedley-corepy-cgo09_poster,
    author = {Andrew Friedley and Christopher Mueller and Andrew Lumsdaine},
    title = {Presenting {CorePy}: A Synthetic Programming Environment For Python},
    note = {Poster Presentation at CGO 2009},
    month = {March},
    year = {2009},
    location = {Seattle, WA} }


  12. Andrew Friedley. Improving Performance Critical Code Development via Synthetic Programming, March 2009.
    Note: Presentation at Sandia National Laboratories.
    @Misc{friedley-corepy-sandia09,
    author = {Andrew Friedley},
    title = {Improving Performance Critical Code Development via Synthetic Programming},
    note = {Presentation at Sandia National Laboratories},
    month = {March},
    year = {2009},
    location = {Livermore, CA} }


  13. Joseph A. Cottam and Andrew Lumsdaine. Bit by Bit: Incremental Data Visualization. IEEE Symposium on Information Visualization (poster), 2009.
    Keywords: Visualization.
    @misc{Cottam_poster_2009Incremental,
    Author = {Joseph A. Cottam and Andrew Lumsdaine},
    Date-Added = {2012-05-31 15:09:07 +0000},
    Date-Modified = {2012-06-06 19:57:24 +0000},
    Howpublished = {IEEE Symposium on Information Visualization (poster)},
    Keywords = {Visualization},
    Location = {Sacramento, California},
    Thanks = {This work was supported in part by a grant from the Lilly Endowment.},
    Title = {Bit by Bit: Incremental Data Visualization},
    Year = {2009} }



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