Thesis (2)
  1. William E. Byrd. Relational Programming in miniKanren: Techniques, Applications, and Implementations. PhD thesis, Indiana University, September 2009. [bibtex-entry]


  2. Brian W. Barrett. One-Sided Communication for High Performance Computing Applications. PhD thesis, Indiana University, March 2009. [bibtex-entry]


Articles in journals or book chapters (7)
  1. M. H. Swat, S. D. Hester, A. I. Balter, R. W. Heiland, B. L. Zaitlen, and J. A. Glazier. Multicell simulations of development and disease using the CompuCell3D simulation environment. In I. V. Maly, editor,Systems Biology, volume 500 of Methods in Molecular Biology, pages 361--428. Humana Press, Clifton, NJ, 2009. [bibtex-entry]


  2. Peter Gottschling, David S. Wise, and Adwait Joshi. Generic Support of Algorithmic and Structural Recursion for Scientific Computing. The International Journal of Parallel, Emergent and Distributed Systems (IJPEDS), 24(6):479--503, December 2009. [bibtex-entry]


  3. T. Hoefler, T. Schneider, and A. Lumsdaine. The Effect of Network Noise on Large-Scale Collective Communications. Parallel Processing Letters (PPL), Dec. 2009. [bibtex-entry]


  4. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory (SIMPAT), 17(9):1511-1521, Oct. 2009. [bibtex-entry]


  5. T. Hoefler, T. Schneider, and A. Lumsdaine. LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations.. Elsevier Journal of Simulation Modelling Practice and Theory, Jun. 2009. [bibtex-entry]


  6. J. Huang, J. Jia, and B. Zhang. FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions. Computer Physics Communications, 180:2331-2338, 2009. [bibtex-entry]


  7. Marcin Zalewski and Sibylle Schupp. A Semantic Definition of Separate Type Checking in C++ with Concepts. Journal of Object Technology, 8(5):105--132, 2009.
    Note: Extended version available in Zalewski's PhD thesis. [bibtex-entry]


Conference articles (35)
  1. P. Kambadur, A. Gupta, T. Hoefler, and A. Lumsdaine. Demand-driven Execution of Static Directed Acyclic Graphs Using Task Parallelism. In , Dec. 2009.
    Note: 2009 International Conference on High Performance Computing (HIPC-2009). [bibtex-entry]


  2. Prabhanjan Kambadur, Torsten Hoefler, Anshul Gupta, and Andrew Lumsdaine. Demand-driven Execution of Static Direct Acyclic Graphs Using Task Parallelism. In International Conference on High Performance Computing (HiPC), Kochi, India, December 2009. [bibtex-entry]


  3. Prabhanjan Kambadur, Anshul Gupta, Amol Ghoting, Haim Avron, and Andrew Lumsdaine. PFunc: Modern Task Parallelism For Modern High Performance Computing. In Proceedings of the 2008 ACM/IEEE conference on Supercomputing (SC), Portland, Oregon, November 2009. [bibtex-entry]


  4. Jeremiah James Willcock, Andrew Lumsdaine, and Daniel J. Quinlan. Reusable, Generic Program Analyses and Transformations. In GPCE, New York, NY, USA, pages 5--14, October 2009. ACM. [bibtex-entry]


  5. T. Hoefler, A. Lumsdaine, and J. Dongarra. Towards Efficient MapReduce Using MPI. In Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Sep. 2009. Springer. [bibtex-entry]


  6. T. Hoefler, A. Lumsdaine, and J. Dongarra. Towards Efficient MapReduce Using MPI. In Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Sep. 2009. Springer. [bibtex-entry]


  7. T. Hoefler, C. Siebert, and A. Lumsdaine. Group Operation Assembly Language - A Flexible Way to Express Collective Communication. In In proceedings of the 38th International Conference on Parallel Processing (ICPP-2009), Sep. 2009. [bibtex-entry]


  8. T. Hoefler, C. Siebert, and A. Lumsdaine. Group Operation Assembly Language - A Flexible Way to Express Collective Communication. In ICPP-2009 - The 38th International Conference on Parallel Processing, Sep. 2009. IEEE. [bibtex-entry]


  9. Prabhanjan Kambadur, Amol Ghoting, Anshul Gupta, and Andrew Lumsdaine. Extending Task Parallelism For Frequent Pattern Mining. In Proceedings of the International Conference on Parallel Computing (ParCO), Lyon, France, September 2009. [bibtex-entry]


  10. Andrew Friedley, Christopher Mueller, Ben Martin, and Andrew Lumsdaine. High-Performance Code Generation Using CorePy. In SciPy 2009, August 2009. [bibtex-entry]


  11. T. Hoefler, T. Schneider, and A. Lumsdaine. Optimized Routing for Large-Scale InfiniBand Networks. In 17th Annual IEEE Symposium on High Performance Interconnects (HOTI 2009), Aug. 2009. [bibtex-entry]


  12. Daniel Lincke, Patrik Jansson, Marcin Zalewski, and Cezar Ionescu. Generic Libraries in C++ with Concepts from High-Level Domain Descriptions in Haskell. In IFIP TC 2 Working Conference on Domain-Specific Languages, pages 236--261, July 2009. [bibtex-entry]


  13. Andreas Saebjoernsen, Jeremiah Willcock, Thomas Panas, Dan Quinlan, and Zhendong Su. Detecting Code Clones in Binary Executables. In International Symposium on Software Testing and Analysis (ISSTA), July 2009. [bibtex-entry]


  14. Joshua Hursey, Timothy I. Mattox, and Andrew Lumsdaine. Interconnect Agnostic Checkpoint/Restart in Open MPI. In Proceedings of the Eighteenth International Symposium on High Performance Distributed Computing (HPDC 2009), June 2009. ACM.
    Keywords: Open MPI, high performance computing, rollback-recovery, MPI, fault tolerance, checkpoint/restart, High Speed Interconnect, InfiniBand, Shared Memory, Myrinet, Checkpoint Coordination Protocol. [bibtex-entry]


  15. T. Hoefler, T. Schneider, and A. Lumsdaine. A Power-Aware, Application-Based, Performance Study Of Modern Commodity Cluster Interconnection Networks. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), CAC Workshop, May 2009. [bibtex-entry]


  16. T. Hoefler, T. Schneider, and A. Lumsdaine. The Impact of Network Noise at Large-Scale Communication Performance. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), LSPP Workshop, May 2009. [bibtex-entry]


  17. T. Hoefler and J. L. Träff. Sparse Collective Operations for MPI. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), HIPS Workshop, May 2009. [bibtex-entry]


  18. C. Kaiser, T. Hoefler, B. Bierbaum, and T. Bemmerl. Implementation and Analysis of Nonblocking Collective Operations on SCI Networks. In Proceedings of the 23rd IEEE International Parallel & Distributed Processing Symposium (IPDPS), CAC Workshop, May 2009. [bibtex-entry]


  19. J. Mueller, T. Schneider, J. Domke, R. Geyer, M. Haesing, T. Hoefler, S. Hoehlig, G. Juckeland, A. Lumsdaine, M. Mueller, and W. Nagel. Cluster Challenge 2008: Optimizing Cluster Configuration and Applications to Maximize Power Efficiency. In 10th LCI International Conference on High-Performance Clustered Computing, Mar. 2009.
    Note: 2nd best paper. [bibtex-entry]


  20. Jeremy G. Siek, Ronald Garcia, and Walid Taha. Exploring the Design Space of Higher-Order Casts. In European Symposium on Programming, March 2009. [bibtex-entry]


  21. Geoffrey Belter, E. R. Jessup, Ian Karlin, and Jeremy G. Siek. Automating the Generation of Composed Linear Algebra Kernels. In International Conference for High Performance Computing, Networking, Storage and Analysis, 2009. [bibtex-entry]


  22. Joseph A. Cottam and Andrew Lumsdaine. Algebraic Guide Generation. In 13th International Conference on Information Visualzation (IV'09), 2009.
    Keywords: Visualization. [bibtex-entry]


  23. Ronald Garcia and Andrew Lumsdaine. Toward foundations for type-reflective metaprogramming. In GPCE '09: Proceedings of the eighth international conference on Generative programming and component engineering, New York, NY, USA, pages 25--34, 2009. ACM. [bibtex-entry]


  24. Ronald Garcia, Andrew Lumsdaine, and Amr Sabry. Lazy evaluation and delimited control. In POPL '09: Proceedings of the 36th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages, New York, NY, USA, pages 153--164, 2009. ACM. [bibtex-entry]


  25. Todor G. Georgiev and Andrew Lumsdaine. Resolution in Plenoptic Cameras. In Computational Optical Sensing and Imaging, pages CTuB3, 2009. Optical Society of America.
    Keywords: Geometric optics, Matrix methods in paraxial optics, Imaging systems, Photography. [bibtex-entry]


  26. Todor G. Georgiev, Andrew Lumsdaine, and Sergio Goma. High Dynamic Range Image Capture with Plenoptic 2.0 Camera. In Signal Recovery and Synthesis, pages SWA7P, 2009. Optical Society of America.
    Keywords: Detectors, Cameras, Imaging systems, Photography. [bibtex-entry]


  27. Todor G. Georgiev and Andrew Lumsdaine. Superresolution with Plenoptic 2.0 Cameras. In Signal Recovery and Synthesis, pages STuA6, 2009. Optical Society of America.
    Keywords: Image processing, Superresolution, Imaging systems, Multiframe image processing. [bibtex-entry]


  28. T. Georgiev and A. Lumsdaine. The Focused Plenoptic Camera. In Proceedings International Conference on Computational Photography, 2009. [bibtex-entry]


  29. Justin E. Gottschlich, Jeremy G. Siek, Manish Vachharajani, Dwight Y. Winkler, and Daniel A. Connors. An efficient lock-aware transactional memory implementation. In Proceedings of the 4th workshop on the Implementation, Compilation, Optimization of Object-Oriented Languages and Programming Systems, ICOOOLPS '09, New York, NY, USA, pages 10--17, 2009. ACM. [bibtex-entry]


  30. Peter Gottschling and Dag Lindbo. Generic compressed sparse matrix insertion: algorithms and implementations in MTL4 and FEniCS. In POOSC '09: Proceedings of the 8th workshop on Parallel/High-Performance Object-Oriented Scientific Computing, New York, NY, USA, pages 1--8, 2009. ACM. [bibtex-entry]


  31. R. Gupta, P. Beckman, B. Park, E. Lusk, P. Hargrove, A. Geist, D. Panda, A. Lumsdaine, and J. Dongarra. CIFTS: A Coordinated Infrastructure for Fault-Tolerant Systems. In Interntional Conference on Parallel Processing (ICPP), pages 237--245, 2009. [bibtex-entry]


  32. Andrew W. Keep, Michael D. Adams, Lindsey Kuper, William E. Byrd, and Daniel P. Friedman. A Pattern-matcher for miniKanren -or- How to Get into Trouble with CPS Macros. In John Clements, editor, Proc. of the 2009 Workshop on Scheme and Functional Programming, Boston, Mass., Aug. 22, 2009, Cal Poly Technical Report CPSLO-CSC-09-03, pages 37--45, 2009. [bibtex-entry]


  33. Boyana Norris, Albert Hartono, Elizabeth Jessup, and Jeremy G. Siek. Generating Empirically Optimized Composed Matrix Kernels from MATLAB Prototypes. In International Conference on Computational Science, 2009. [bibtex-entry]


  34. Jeremy G. Siek and Philip Wadler. Threesomes, with and without blame. In Proceedings for the 1st workshop on Script to Program Evolution, STOP '09, New York, NY, USA, pages 34--46, 2009. ACM. [bibtex-entry]


  35. Angela Yun Zhu, Walid Taha, Robert Cartwright, Matthieu Martel, and Jeremy G. Siek. In Pursuit of Real Answers. In Proceedings of the 2009 International Conference on Embedded Software and Systems, Washington, DC, USA, pages 115--122, 2009. IEEE Computer Society. [bibtex-entry]


Internal reports (5)
  1. Abhishek Kulkarni, Bryce Himebaugh, and Steven D Johnson. Dynamic resource configuration and control for an autonomous robotic vehicle. Technical report, October 2009.
    Note: Work-in-Progress (WIP) Paper. [bibtex-entry]


  2. T. Hoefler on behalf of the MPI Forum. MPI: A Message-Passing Interface Standard -- Working-Draft for Nonblocking Collective Operations. Technical report, MPI Forum, Apr. 2009. [bibtex-entry]


  3. T. Schneider, T. Hoefler, and A. Lumsdaine. ORCS: An Oblivious Routing Congestion Simulator. Technical report 675, Indiana University, Feb. 2009. [bibtex-entry]


  4. T. Schneider, T. Hoefler, and A. Lumsdaine. ORCS: An Oblivious Routing Congestion Simulator. Technical report 675, Indiana University, Feb. 2009. [bibtex-entry]


  5. D. Gregor, T. Hoefler, B. Barrett, and A. Lumsdaine. Fixing Probe for Multi-Threaded MPI Applications. Technical report 674, Indiana University, Jan. 2009. [bibtex-entry]


Posters and Presentations (13)
  1. Joshua Hursey, Jeffrey M. Squyres, Abhishek Kulkarni, and Andrew Lumsdaine. Open MPI Tutorial. Tutorial at the Indiana University booth at the ACM/IEEE SC09 Conference, Portland, Oregon, November 2009. [bibtex-entry]


  2. Abhishek Kulkarni. Process Resilience in Open MPI using the CIFTS Fault Tolerance Backplane: A POV-Ray Demonstration. Presentation and Demo at the Argonne National Laboratory booth at the ACM/IEEE SC09 Conference, Portland, Oregon, November 2009. [bibtex-entry]


  3. R. Heiland and J.A. Glazier. Multi-Cell Simulations of Gastrulation and Somitogenesis Using CompuCell3D. International Conference on Computational Bioengineering (ICCB), Bertinoro, Italy, September 2009. [bibtex-entry]


  4. Prabhanjan Kambadur. Extending Task Parallelism For Frequent Pattern Mining. International Conference on Parallel Computing, September 2009. [bibtex-entry]


  5. Prabhanjan Kambadur. Extending Task Parallelism For Frequent Pattern Mining. IBM T J Watson Research Center, August 2009. [bibtex-entry]


  6. Prabhanjan Kambadur. An OpenCL Tutorial. Invited talk at IBM T J Watson Research Center, August 2009. [bibtex-entry]


  7. Prabhanjan Kambadur. PFunc: Modern Task Parallelism For Modern High Performance Computing. IBM T J Watson Research Center, July 2009. [bibtex-entry]


  8. Joseph A. Cottam and Andrew Lumsdaine. GuideMe: Automatic Generation of Legends and Guides, May 2009. [bibtex-entry]


  9. Peter Gottschling. Scientific Computing in Silicon (in German). Presentation at Silicon Saxony Day, Dresden, May 2009. [bibtex-entry]


  10. B. Zaitlen and R. Heiland. Spatial Geometry in CompuCell3D. Presentation at the CellML-SBGN-SBO-BioPAX-MIASE Workshop, Auckland, New Zealand, April 2009. [bibtex-entry]


  11. Andrew Friedley, Christopher Mueller, and Andrew Lumsdaine. Presenting CorePy: A Synthetic Programming Environment For Python, March 2009.
    Note: Poster Presentation at CGO 2009. [bibtex-entry]


  12. Andrew Friedley. Improving Performance Critical Code Development via Synthetic Programming, March 2009.
    Note: Presentation at Sandia National Laboratories. [bibtex-entry]


  13. Joseph A. Cottam and Andrew Lumsdaine. Bit by Bit: Incremental Data Visualization. IEEE Symposium on Information Visualization (poster), 2009.
    Keywords: Visualization. [bibtex-entry]



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